PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912950
Common NameARALYDRAFT_912950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 269aa    MW: 29371.6 Da    PI: 5.2335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912950genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-19134183255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             gy+GVr+++ +g+++AeIrdp+    r +r++lg+f tae+Aa+a+++a+  ++g
  912950 134 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 183
             8********.**********83....57*********************987776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-12134182IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21134192IPR016177DNA-binding domain
SMARTSM003802.1E-37134197IPR001471AP2/ERF domain
PROSITE profilePS5103224.012134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-32135191IPR001471AP2/ERF domain
PRINTSPR003671.4E-11135146IPR001471AP2/ERF domain
CDDcd000181.95E-21135191No hitNo description
PRINTSPR003671.4E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPY QGFSSDSTVI  60
SAGMPRSVSD TCQVCRIEGC LGCNYFFAPN QRIEKSQQEE EITSSSNSRR ESSPVAKKAE  120
GGGKIRKRKN KKNGYRGVRQ RPWGKFAAEI RDPKRATRVW LGTFETAEDA ARAYDRAAIG  180
FRGPRAKLNF PFVDYTSSVS SPVVADDIGA NASASASVSA TDSVEAEQWP GGEGGECNME  240
EWMNMMMMMD FGNGDSSDSG NTIADMFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25131192264ATERF1
3gcc_A4e-25131192264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250910.0AF325091.1 Arabidopsis thaliana putative protein (F10M10.180) mRNA, complete cds.
GenBankAL0355210.0AL035521.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project).
GenBankAL1615850.0AL161585.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81.
GenBankAY0641510.0AY064151.1 Arabidopsis thaliana AT4g34410/F10M10_180 mRNA, complete cds.
GenBankAY1207000.0AY120700.1 Arabidopsis thaliana AT4g34410/F10M10_180 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869148.10.0hypothetical protein ARALYDRAFT_912950
SwissprotQ9SZ061e-143EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLD7MF170.0D7MF17_ARALL; Putative uncharacterized protein
STRINGscaffold_700692.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-106redox responsive transcription factor 1